Publications in international journals 2001
  • Altenberg-Greulich B, Vriend G.
    Where to attach dye molecules to a protein: lessons from WHAT IF.
    J Mol Struc, 598:1-8., 2001 , PDF


  • Bywater RP, Thomas D, Vriend G.
    A sequence and structural study of transmembrane helices.
    J Comput Aided Mol Des, Jun;15(6):533-552., 2001 , PDF


  • Eijsink VGH, Vriend G, van den Burg B.
    Engineering a hyperstable enzyme by manipulation of early steps in the unfolding process.
    Biocat and Biotrans , 19(5-6):443-458., 2001 , PDF


  • Ettema T, van der Oost J, Huynen M.
    Modularity in the gain and loss of genes: applications for function prediction.
    Trends in Genetics , Sep;17(9):485-487., 2001 , PDF


  • Gey Van Pittius NC, Gamieldien J, Hide W, Brown GD, Siezen RJ, Beyers AD.
    The ESAT-6 gene cluster of Mycobacterium tuberculosis and other high G+C gram-positive bacteria.
    Genome Biology, 2(10):RESEARCH0044., 2001 , PDF


  • Habraken CL, Buijs W, Borkent H, Ligeon W, Wenders H, Meijer M.
    School Chemistry vs. Chemistry in Research: An Exploratory Experiment.
    Journal of Science Education and Technology, 10(3):249-256., 2001 , PDF


  • Hackstein JH, Akhmanova A, Voncken F, van Hoek A, van Alen T, Boxma B, Moon-van der Staay SY, van der Staay G, Leunissen J, Huynen M, Rosenberg J, Veenhuis M.
    Hydrogenosomes: convergent adaptations of mitochondria to anaerobic environments.
    Zoology , 104(3-4):290-302., 2001 , PDF


  • Horn F, Vriend G, Cohen FE.
    Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems.
    Nucleic Acids Res, Jan 1;29(1):346-349., 2001 , PDF


  • Huynen MA.
    Using comparative genome analysis to find interaction partners for frataxin.
    Proceedings of ESF Cardiovascular Genomics: New Pathophysiological Concepts, Edited by Doevendans PA, Kääb S. Issue 4., 2001


  • Huynen MA, Snel B, Bork P.
    Inversions and the dynamics of eukaryotic gene order.
    Trends in Genetics , Jun;17(6):304-306., 2001 , PDF


  • Huynen MA, Snel B, Bork P, Gibson TJ.
    The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly.
    Human Molecular Genetics, Oct 1;10(21):2463-2468., 2001 , PDF


  • Iconomidou VA, Chryssikos GD, Gionis V, Vriend G, Hoenger A, Hamodrakas SJ.
    Amyloid-like fibrils from an 18-residue peptide analogue of a part of the central domain of the B-family of silkmoth chorion proteins.
    FEBS Lett, Jun 22;499(3):268-273., 2001 , PDF


  • de Kreij A, van den Burg B, Veltman OR, Vriend G, Venema G, Eijsink VG.
    The effect of changing the hydrophobic S1' subsite of thermolysin-like protease substrate specificity.
    Eur J Biochem, Sep;268(18):4985-4991., 2001 , PDF


  • Kresse HP, Czubayko M, Nyakatura G, Vriend G, Sander C, Bloecker H.
    Four-helix bundle topology re-engineered: monomeric Rop protein variants with different loop arrangements.
    Protein Eng, Nov;14(11):897-901., 2001 , PDF


  • Levashina EA, Moita LF, Blandin S, Vriend G, Lagueux M, Kafatos FC.
    Conserved role of a complement-like protein in phagocytosis revealed by dsRNA knockout in cultured cells of the mosquito, Anopheles gambiae.
    Cell, Mar 9;104(5):709-718., 2001 , PDF


  • Nielsen JE, Borchert TV, Vriend G.
    The determinants of alpha-amylase pH-activity profiles.
    Protein Eng, Jul;14(7):505-512., 2001 , PDF


  • Nielsen JE, Vriend G.
    Optimizing the Hydrogen-Bond Network in Poisson-Boltzmann Equation-based pKa Calculations.
    Proteins, Jun 1;43(4):403-412., 2001 , PDF


  • Oliveira L, Vriend G, Paiva ACM.
    A common ligand-binding site in G protein-coupled receptors.
    Peptides for the new millennium, Edited by Fields, Tam, Barany. Kluwer, Dordrecht/Boston/London. pp 581-582., 2001


  • Ursing BM, van Enckevort FH, Leunissen JA, Siezen RJ.
    EXProt - a database for EXPerimentally verified Protein functions.
    In Silico Biol, (1):1-4., 2001 , PDF


  • Verhees CH, Huynen MA, Ward DE, Schiltz E, de Vos WM, van der Oost J.
    The Phosphoglucose Isomerase from the Hyperthermophilic Archaeon Pyrococcus furiosus Is a Unique Glycolytic Enzyme That Belongs to the Cupin Superfamily.
    Journal of Biological Chemistry , Nov 2;276(44):40926-40932., 2001 , PDF


  • de Vos WM, Voorhorst WG, Dijkgraaf M, Kluskens LD, Van der Oost J, Siezen RJ.
    Purification, characterization, and molecular modelling of pyrolysin and other extracellular thermostable serine proteases from hyperthermophilic microorganisms.
    Methods in Enzymology , 330:383-393., 2001 , PDF


  • Siezen RJ.
    Bioinformatica voorspelt bacterie potentie voor voedingsindustrie.
    B for You, 16:14-15., 2001