Most recent publications

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  • Ganapathy S, Venselaar H, Chen Q, de Groot HJ, Hellingwerf KJ, de Grip WJ.
    Retinal-Based Proton Pumping in the Near Infrared
    J Am Chem Soc., 2017 Feb 15;139(6):2338-44, 2017 Details

  • Guerrero-Castillo S, Cabrera-Orefice A, Huynen MA, Arnold S.
    Identification and evolutionary analysis of tissue-specific isoforms of mitochondrial complex I subunit NDUFV3.
    Biochimica et biophysica acta., 2017 Mar;1858(3):208-17, 2017 Details

  • Khandelwal KD, Ishorst N, Zhou H, Ludwig KU, Venselaar H, Gilissen C, Thonissen M, van Rooij IA, Dreesen K, Steehouwer M, van de Vorst M, Bloemen M, van Beusekom E, Roosenboom J, Borstlap W, Admiraal R, Dormaar T, Schoenaers J, Vander Poorten V, Hens G, Verdonck A, Berge S, Roeleveldt N, Vriend G, Devriendt K, Brunner HG, Mangold E, Hoischen A, van Bokhoven H, Carels CE.
    Novel IRF6 Mutations Detected in Orofacial Cleft Patients by Targeted Massively Parallel Sequencing
    J Dent Res., 2017 Feb;96(2):179-85, 2017 Details

  • McGuire R, Verhoeven S, Vass M, Vriend G, de Esch IJP, Lusher SJ, Leurs R, Ridder L, Kooistra AJ, Rischel T, de Graaf C 
    3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine
    J Chem Inf Model, Feb 14. doi: 10.1021/acs.jcim.6b00686. [Epub ahead of print], 2017 Details

  • Koch J, Mayr JA, Alhaddad B, Rauscher C, Bierau J, Kovacs-Nagy R, Coene KL, Bader I, Holzhacker M, Prokisch H, Venselaar H, Wevers RA, Distelmaier F, Polster T, Leiz S, Betzler C, Strom TM, Sperl W, Meitinger T, Wortmann SB, Haack TB.
    CAD mutations and uridine-responsive epileptic encephalopathy.
    Brain., 2017 Feb;140(Pt 2):279-86, 2017 Details

  • Mobegi FM, Cremers AJ, de Jonge MI, Bentley SD, van Hijum SA, Zomer A.
    Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data.
    Sci Rep., 2017 Feb 16;7:42808, 2017 Details

  • Roerink ME, Lenders JW, Schmits IC, Pistorius AM, Smit JW, Knoop H, van der Meer JW.
    Postural orthostatic tachycardia is not a useful diagnostic marker for chronic fatigue syndrome
    J Intern Med., 2017 Feb;281(2):179-88, 2017 Details

  • Tunjungputri RN, Mobegi FM, Cremers AJ, van der Gaast-de Jongh CE, Ferwerda G, Meis JF, Roeleveld N, Bentley SD, Pastura AS, van Hijum SA, van der Ven AJ, de Mast Q, Zomer A, de Jonge MI.
    Phage-Derived Protein Induces Increased Platelet Activation and Is Associated with Mortality in Patients with Invasive Pneumococcal Disease
    MBio., 2017 Jan 17;8(1), 2017 Details

  • Zazo Seco C, Castells-Nobau A, Joo SH, Schraders M, Foo JN, van der Voet M, Velan SS, Nijhof B, Oostrik J, de Vrieze E, Katana R, Mansoor A, Huynen M, Szklarczyk R, Oti M, Tranebjaerg L, van Wijk E, Scheffer-de Gooyert JM, Siddique S, Baets J, de Jonghe P, Kazmi SA, Sadananthan SA, van de Warrenburg BP, Khor CC, Gopfert MC, Qamar R, Schenck A, Kremer H, Siddiqi S.
    A homozygous FITM2 mutation causes a deafness-dystonia syndrome with motor regression and signs of ichthyosis and sensory neuropathy
    Dis Model Mech., 2017 Feb 01;10(2):105-18, 2017 Details

  • Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.
    Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee
    Arch Virol., 2017 Apr;162(4):1153-7, 2017 Details

  • Bull C, Heise T, van Hilten N, Pijnenborg JF, Bloemendal VR, Gerrits L, Kers-Rebel ED, Ritschel T, den Brok MH, Adema GJ, Boltje TJ
    Steering Siglec-Sialic Acid Interactions on Living Cells using Bioorthogonal Chemistry
    Angew Chem Int Ed Engl, 2017 Mar 13;56(12):3309-13, 2017 Details

  • Koch J, Mayr JA, Alhaddad B, Rauscher C, Bierau J, Kovacs-Nagy R, Coene KL, Bader I, Holzhacker M, Prokisch H, Venselaar H, Wevers RA, Distelmaier F, Polster T, Leiz S, Betzler C, Strom TM, Sperl W, Meitinger T, Wortmann SB, Haack TB.
    CAD mutations and uridine-responsive epileptic encephalopathy
    Brain., 2017 Feb;140(Pt 2):279-86, 2017 Details

  • Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK.
    Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.
    Front Microbiol., 2017;8:352, 2017 Details

  • Prattes M, Loibl M, Zisser G, Luschnig D, Kappel L, Rossler I, Grassegger M, Hromic A, Krieger E, Gruber K, Pertschy B, Bergler H.
    A conserved inter-domain communication mechanism regulates the ATPase activity of the AAA-protein Drg1.
    Sci Rep., 2017 Mar 17;7:44751, 2017 Details

  • Wels M, Backus L, Boekhorst J, Dijkstra A, Beerthuyzen M, Siezen RJ, Bachmann H, van Hijum SA.
    Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains.
    Genome announcements., 2017 Mar 16;5(11), 2017 Details

  • Zeeuwen PL, Boekhorst J, Ederveen TH, Kleerebezem M, Schalkwijk J, van Hijum SA, Timmerman HM.
    Reply to Meisel et al.
    J Invest Dermatol., 2017 Apr;137(4):961-2, 2017 Details

  • van Kruijsbergen I, Hontelez S, Elurbe DM, van Heeringen SJ, Huynen MA, Veenstra GJ.
    Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.
    Dev Biol., 2016 Sep 14. pii: S0012-1606(16)30221-4, 2017 Details

  • Zeeuwen PL, Ederveen TH, van der Krieken DA, Niehues H, Boekhorst J, Kezic S, Hanssen DA, Otero ME, van Vlijmen-Willems IM, Rodijk-Olthuis D, Falcone D, van den Bogaard EH, Kamsteeg M, de Koning HD, Zeeuwen-Franssen ME, van Steensel MA, Kleerebezem M, Timmerman HM, van Hijum SA, Schalkwijk J.
    Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin
    J Allergy Clin Immunol., 2016 Oct 8. pii: S0091-6749(16)31117-4, 2017 Details

  • Baertling F, Al-Murshedi F, Sanchez-Caballero L, Al-Senaidi K, Joshi NP, Venselaar H, van den Brand MA, Nijtmans LG, Rodenburg RJ
    Mutation in mitochondrial complex IV subunit COX5A causes pulmonary arterial hypertension, lactic acidemia, and failure to thrive
    Hum Mutat, 2017 Jun;38(6):692-703, 2017 Details

  • Backus L, Wels M, Boekhorst J, Dijkstra AR, Beerthuyzen M, Kelly WJ, Siezen RJ, van Hijum SA, Bachmann H
    Draft Genome Sequences of 24 Lactococcus lactis Strains
    Genome announcements, 2017 Mar 30;5(13), 2017 Details

  • Mobegi FM, Zomer A, de Jonge MI, van Hijum SA
    Advances and perspectives in computational prediction of microbial gene essentiality
    Brief Funct Genomics, 2017 Mar 01;16(2):70-9, 2017 Details

  • Bruel AL, Franco B, Duffourd Y, Thevenon J, Jego L, Lopez E, Deleuze JF, Doummar D, Giles RH, Johnson CA, Huynen MA, Chevrier V, Burglen L, Morleo M, Desguerres I, Pierquin G, Doray B, Gilbert-Dussardier B, Reversade B, Steichen-Gersdorf E, Baumann C, Panigrahi I, Fargeot-Espaliat A, Dieux A, David A, Goldenberg A, Bongers E, Gaillard D, Argente J, Aral B, Gigot N, St-Onge J, Birnbaum D, Phadke SR, Cormier-Daire V, Eguether T, Pazour GJ, Herranz-Perez V, Goldstein JS, Pasquier L, Loget P, Saunier S, Megarbane A, Rosnet O, Leroux MR, Wallingford JB, Blacque OE, Nachury MV, Attie-Bitach T, Riviere JB, Faivre L, Thauvin-Robinet C
    Fifteen years of research on oral-facial-digital syndromes: from 1 to 16 causal genes
    J Med Genet, 2017 Jun;54(6):371-80, 2017 Details

  • Isberg V, Mordalski S, Munk C, Rataj K, Harpsoe K, Hauser AS, Vroling B, Bojarski AJ, Vriend G, Gloriam DE
    GPCRdb: an information system for G protein-coupled receptors
    Nucleic Acids Res, 2017 Mar 17;45(5):2936, 2017 Details

  • Maat DS, Biggs T, Evans C, van Bleijswijk JDL, van der Wel NN, Dutilh BE, Brussaard CPD
    Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses
    Viruses, 2017 Jun 02;9(6), 2017 Details

  • Nebenzahl-Guimaraes H, van Laarhoven A, Farhat MR, Koeken V, Mandemakers JJ, Zomer A, van Hijum S, Netea MG, Murray M, van Crevel R, van Soolingen D
    Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes
    Am J Respir Crit Care Med, 2017 Jun 01;195(11):1519-27, 2017 Details

  • Rogier R, Ederveen THA, Boekhorst J, Wopereis H, Scher JU, Manasson J, Frambach S, Knol J, Garssen J, van der Kraan PM, Koenders MI, van den Berg WB, van Hijum S, Abdollahi-Roodsaz S
    Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis
    Microbiome, 2017 Jun 23;5(1):63, 2017 Details

  • Speth DR, Lagkouvardos I, Wang Y, Qian PY, Dutilh BE, Jetten MSM
    Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria
    Microb Ecol, 2017 Jul;74(1):1-5, 2017 Details

  • van den Bergh T, Tamo G, Nobili A, Tao Y, Tan T, Bornscheuer UT, Kuipers RKP, Vroling B, de Jong RM, Subramanian K, Schaap PJ, Desmet T, Nidetzky B, Vriend G, Joosten HJ
    CorNet: Assigning function to networks of co-evolving residues by automated literature mining
    PLoS One, 2017;12(5):e0176427, 2017 Details

  • van der Wijst J, Leunissen EH, Blanchard MG, Venselaar H, Verkaart S, Paulsen CE, Bindels RJ, Hoenderop JG
    A Gate Hinge Controls the Epithelial Calcium Channel TRPV5
    Sci Rep, 2017 Apr 04;7:45489, 2017 Details

  • van Kruijsbergen I, Hontelez S, Elurbe DM, van Heeringen SJ, Huynen MA, Veenstra GJC
    Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos
    Dev Biol, 2017 Jun 15;426(2):460-71, 2017 Details

  • Vollan HS, Tannaes T, Caugant DA, Vriend G, Bukholm G
    Outer membrane phospholipase A's roles in Helicobacter pylori acid adaptation
    Gut Pathog, 2017;9:36, 2017 Details

  • Waanders E, Scheijen B, Jongmans MC, Venselaar H, van Reijmersdal SV, van Dijk AH, Pastorczak A, Weren RD, van der Schoot CE, van de Vorst M, Sonneveld E, Hoogerbrugge N, van der Velden VH, Gruhn B, Hoogerbrugge PM, van Dongen JJ, Geurts van Kessel A, van Leeuwen FN, Kuiper RP
    Germline activating TYK2 mutations in pediatric patients with two primary acute lymphoblastic leukemia occurrences
    Leukemia, 2017 Apr;31(4):821-8, 2017 Details

  • Wozniak PP, Vriend G, Kotulska M
    Correlated mutations select misfolded from properly folded proteins
    Bioinformatics, 2017 May 15;33(10):1497-504, 2017 Details

  • Aarts E, Ederveen THA, Naaijen J, Zwiers MP, Boekhorst J, Timmerman HM, Smeekens SP, Netea MG, Buitelaar JK, Franke B, van Hijum S, Arias Vasquez A.
     Gut microbiome in ADHD and its relation to neural reward anticipation
    PLoS One, 2017;12(9):e0183509, 2017 Details

  • Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.
    Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
    Nat Commun, 2017 Jul 05;8:15955, 2017 Details

  • de Vos P, Mujagic Z, de Haan BJ, Siezen RJ, Bron PA, Meijerink M, Wells JM, Masclee AAM, Boekschoten MV, Faas MM, Troost FJ.
    Lactobacillus plantarum Strains Can Enhance Human Mucosal and Systemic Immunity and Prevent Non-steroidal Anti-inflammatory Drug Induced Reduction in T Regulatory Cells
    Front Immunol., 2017;8:1000, 2017 Details

  • Gerritsen J, Hornung B, Renckens B, van Hijum S, Martins Dos Santos VAP, Rijkers GT, Schaap PJ, de Vos WM, Smidt H.
    Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine
    PeerJ., 2017;5:e3698, 2017 Details

  • Lelieveld SH, Wiel L, Venselaar H, Pfundt R, Vriend G, Veltman JA, Brunner HG, Vissers L, Gilissen C.
    Spatial Clustering of de Novo Missense Mutations Identifies Candidate Neurodevelopmental Disorder-Associated Genes.
    Am J Hum Genet., 2017 Sep 07;101(3):478-84, 2017 Details

  • Quainoo S, Coolen JPM, van Hijum S, Huynen MA, Melchers WJG, van Schaik W, Wertheim HFL.
    Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis
    Clin Microbiol Rev., 2017 Oct;30(4):1015-63, 2017 Details

  • Schwarte A, Genz M, Skalden L, Nobili A, Vickers C, Melse O, Kuipers R, Joosten HJ, Stourac J, Bendl J, Black J, Haase P, Baakman C, Damborsky J, Bornscheuer U, Vriend G, Venselaar H.
    NewProt - a protein engineering portal.
    Protein Eng Des Sel., 2017 Jun 01;30(6):441-7, 2017 Details

  • Walk J, Reuling IJ, Behet MC, Meerstein-Kessel L, Graumans W, van Gemert GJ, Siebelink-Stoter R, van de Vegte-Bolmer M, Janssen T, Teelen K, de Wilt JHW, de Mast Q, van der Ven AJ, Diez Benavente E, Campino S, Clark TG, Huynen MA, Hermsen CC, Bijker EM, Scholzen A, Sauerwein RW.
    Modest heterologous protection after Plasmodium falciparum sporozoite immunization: a double-blind randomized controlled clinical trial.
    BMC Med., 2017 Sep 13;15(1):168, 2017 Details

  • Zuidscherwoude M, Worah K, van der Schaaf A, Buschow SI, van Spriel AB.
    Differential expression of tetraspanin superfamily members in dendritic cell subsets.
    PLoS One., 2017;12(9):e0184317., 2017 Details

  • van der Lee R., Wiel Laurens, Teunis J.P., Huynen, Martijn A.
    Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts
    Nucleic Acids Res., 2017 11-08-2017;gkx704, 2017 Details